STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231889CLN6 transmembrane ER protein b. (305 aa)    
Predicted Functional Partners:
cln5
CLN5 intracellular trafficking protein.
  
   
 0.667
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.556
LOC111236002
Uncharacterized protein.
 
  
  0.542
cln3
Battenin.
      
 0.538
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.536
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.535
mfsd8
Major facilitator superfamily domain containing 8.
      
 0.491
LOC111228090
Integrin beta.
   
 0.489
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.489
LOC111233864
Integrin beta; Belongs to the integrin beta chain family.
   
 0.489
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.