STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111219482Uncharacterized protein. (253 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.550
LOC111217580
Intersectin 2b.
   
 0.480
itsn2
Intersectin 2a.
   
 0.480
birc6
Baculoviral IAP repeat containing 6.
   
 0.473
ENSSDUP00000030530
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.473
ENSSDUP00000004365
Uncharacterized protein.
   
 0.471
traf7
TNF receptor-associated factor 7.
   
 0.467
LOC111232025
Im:7152348.
    
 0.465
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.425
gak
Cyclin G associated kinase.
    
 0.417
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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