STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221645RAB7a, member RAS oncogene family. (135 aa)    
Predicted Functional Partners:
LOC111239516
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.925
LOC111219788
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.890
rubcn
Rubicon autophagy regulator.
    
 
 0.779
pdzd8
PDZ domain containing 8.
    
 
 0.768
LOC111224134
Rab interacting lysosomal protein.
    
 0.740
LOC111235062
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.734
OSBPL1A
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.734
LOC111237009
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.734
LOC111226334
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.734
LOC111222850
MON1 secretory trafficking family member Bb.
    
 0.721
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.