STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111239401Uncharacterized protein. (1407 aa)    
Predicted Functional Partners:
CBX2
Chromobox 2.
    
 0.636
cbx8
Chromobox homolog 8b.
    
 0.608
LOC111227041
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.608
rnf2
Ring finger protein 2.
    
 0.607
RING1
Ring finger protein 1.
    
 0.607
bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.598
pcgf2
Polycomb group ring finger 2.
    
 0.598
LOC111217430
Chromobox homolog 2 (Drosophila Pc class).
    
 0.581
LOC111223913
Scm polycomb group protein like 2.
    
 0.553
SCMH1
Scm polycomb group protein homolog 1.
    
 0.553
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.