STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3AUbiquitin protein ligase E3A. (805 aa)    
Predicted Functional Partners:
LOC111233015
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 
 0.949
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.909
LOC111238452
HECT domain-containing protein.
  
  
 
0.901
LOC111237191
Proteasome 26S subunit, non-ATPase 4b.
    
 
 0.874
LOC111223275
Proteasome 26S subunit, non-ATPase 4a.
    
 
 0.874
psmd14
Proteasome 26S subunit, non-ATPase 14.
    
 
 0.807
trip12
Thyroid hormone receptor interactor 12.
   
 
0.705
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.683
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.683
LOC111231859
RAD23 homolog A, nucleotide excision repair protein b.
   
 0.683
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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