STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000030711Microtubule-associated protein. (277 aa)    
Predicted Functional Partners:
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
    
 
 0.680
SNCA
Synuclein alpha; Belongs to the synuclein family.
   
 
 0.556
LOC111219852
STIP1 homology and U-Box containing protein 1.
    
 
 0.547
STUB1
STIP1 homology and U-box containing protein 1.
    
 
 0.502
gsk3b
Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.
    
 
 0.485
LOC111220843
Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.
    
 
 0.485
LOC111230141
Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.
    
 
 0.485
LOC111224299
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.479
LOC111226544
Caspase 3; Belongs to the peptidase C14A family.
    
 0.479
LOC111216621
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
 0.479
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.