STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000030763LAM_G_DOMAIN domain-containing protein. (288 aa)    
Predicted Functional Partners:
ENSSDUP00000020217
Fibrillar collagen NC1 domain-containing protein.
 
      0.898
ENSSDUP00000000525
Si:dkey-21p1.3.
 
   
 0.674
col8a2
Collagen, type VIII, alpha 2.
 
   
 0.672
LOC111225779
Collagen, type X, alpha 1a.
 
   
 0.622
ENSSDUP00000031394
Collagen, type VIII, alpha 1b.
 
   
 0.604
col9a3
Collagen, type IX, alpha 3.
 
   
 0.597
Col10a1
Collagen, type X, alpha 1b.
 
   
 0.584
col22a1
Collagen, type XXII, alpha 1.
 
 
 0.559
col9a1
Collagen, type IX, alpha 1b.
 
   
 0.527
COL8A1
Collagen, type VIII, alpha 1b.
 
   
 0.488
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.