STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000030815RRM domain-containing protein. (1461 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.963
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.963
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.906
ENSSDUP00000030821
Uncharacterized protein.
 
      0.899
cxxc1
CXXC finger protein 1b.
   
 0.881
LOC111235451
CXXC finger protein 1a.
   
 0.881
LOC111222846
WD repeat domain 82.
   
 0.865
ENSSDUP00000018324
WD_REPEATS_REGION domain-containing protein.
   
 
 0.798
rps27a
Ribosomal protein S27a.
   
  0.770
wsb2
WD repeat and SOCS box containing 2.
   
 0.747
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.