STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpraReceptor-type tyrosine-protein phosphatase alpha. (833 aa)    
Predicted Functional Partners:
grb2
Growth factor receptor-bound protein 2b.
   
 0.949
IL1RAP
Interleukin 1 receptor accessory protein.
    
 0.650
pts
6-pyruvoyl tetrahydrobiopterin synthase.
    
 
 0.609
wbp2
WW domain binding protein 2.
   
 
 0.606
ubox5
U-box domain containing 5.
      
 0.599
znf366
Zinc finger protein 366.
     
 0.592
thnsl2
Threonine synthase-like 2.
      
 0.585
znf367
Zinc finger protein 367.
     
 0.584
slitrk2
SLIT and NTRK-like family, member 2.
    
 0.559
LOC111223450
Raftlin, lipid raft linker 1a.
      
 0.556
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.