STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000031197Uncharacterized protein. (147 aa)    
Predicted Functional Partners:
LOC111216826
Uncharacterized protein.
   
 0.677
LOC111222318
Calpain, small subunit 1 b.
   
 0.677
LOC111235646
Zgc:55262; Belongs to the peptidase C2 family.
   
 0.629
LOC111225951
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
   
 0.626
LOC111225630
Zgc:136872; Belongs to the peptidase C2 family.
   
 0.626
LOC111220564
Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.
   
 0.596
LOC111220639
Uncharacterized protein; Belongs to the peptidase C2 family.
   
 0.596
ENSSDUP00000030051
calpain_III domain-containing protein.
   
 0.596
LOC111237566
Calpain 1, (mu/I) large subunit b; Belongs to the peptidase C2 family.
   
 0.596
capn10
Calpain 10; Belongs to the peptidase C2 family.
    
 0.595
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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