STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229886Upper zone of growth plate and cartilage matrix associated b. (132 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
      
 0.592
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.538
Znf536
Zinc finger protein 536.
     
 0.474
ENSSDUP00000028683
Uncharacterized protein.
     
 0.474
LOC111229816
Fin bud initiation factor a.
      
 0.452
ENSSDUP00000002547
Copine VIII.
      
 0.437
CPNE8
Copine 8.
      
 0.437
cd81
Tetraspanin.
   
  
 0.426
LOC111229912
Tetraspanin.
   
  
 0.426
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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