STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adamts13ADAM metallopeptidase with thrombospondin type 1 motif, 13. (1347 aa)    
Predicted Functional Partners:
pofut2
Protein O-fucosyltransferase 2.
     
 0.584
ENSSDUP00000029443
Uncharacterized protein.
     
 0.496
LOC111224418
Beta 3-glucosyltransferase a.
    
 0.464
b3glct
Beta 3-glucosyltransferase b.
    
 0.464
LOC111234927
Uncharacterized protein.
     
 0.444
dgke
Diacylglycerol kinase.
      
 0.437
sspo
Subcommissural organ spondin.
    
0.424
vwf
Von Willebrand factor.
    
 0.424
otogl
Otogelin-like.
    
 0.424
LOC111223029
Otogelin.
    
 0.424
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.