STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl55Zgc:171480. (147 aa)    
Predicted Functional Partners:
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.965
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.954
mrpl51
Mitochondrial ribosomal protein L51.
   
 
 0.952
mrps25
Mitochondrial ribosomal protein S25.
   
 
 0.952
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.949
mrpl43
Mitochondrial ribosomal protein L43.
   
 
 0.948
mrps16
Mitochondrial ribosomal protein S16.
   
   0.944
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.939
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.938
mrpl21
Uncharacterized protein.
   
 
 0.937
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.