STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111221559Transforming, acidic coiled-coil containing protein 1. (894 aa)    
Predicted Functional Partners:
ckap5
Cytoskeleton associated protein 5.
    
 
 0.613
ENSSDUP00000001612
TACC_C domain-containing protein.
  
 
 
0.597
tacc3
Transforming, acidic coiled-coil containing protein 3.
    
 
0.476
cep120
Centrosomal protein 120.
    
 0.430
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.429
ccdc125
Coiled-coil domain containing 125.
      
 0.422
rasl11b
RAS-like, family 11, member B.
    
 0.408
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.