STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk12Cyclin-dependent kinase 12. (1358 aa)    
Predicted Functional Partners:
supt5h
Transcription elongation factor SPT5.
    
 0.953
CCNK
Cyclin K; Belongs to the cyclin family.
   
 0.936
LOC111226168
Cyclin K; Belongs to the cyclin family.
   
 0.936
ENSSDUP00000009910
Uncharacterized protein.
   
 0.914
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.914
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.845
ctdp1
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1.
   
 0.834
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 0.829
LOC111218225
Cyclin T2; Belongs to the cyclin family.
   
 0.829
LOC111222774
Cyclin T2b; Belongs to the cyclin family.
   
 0.829
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.