STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpra1Transmembrane protein, adipocyte asscociated 1. (390 aa)    
Predicted Functional Partners:
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.590
rspry1
Ring finger and SPRY domain containing 1.
      
 0.586
GTF3C1
General transcription factor IIIC subunit 1.
      
 0.557
nudt13
Nudix (nucleoside diphosphate linked moiety X)-type motif 13.
      
 0.536
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.531
LOC111233230
Coiled-coil domain containing 106b.
      
 0.505
fbxo9
F-box protein 9.
      
 0.487
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
      
 0.430
nudt3
Nudix (nucleoside diphosphate linked moiety X)-type motif 3b.
   
  
 0.425
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
      
 0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.