STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pctpPhosphatidylcholine transfer protein. (213 aa)    
Predicted Functional Partners:
acot13
Acyl-CoA thioesterase 13.
    
 
 0.632
stard5
StAR-related lipid transfer (START) domain containing 5.
   
  
 0.610
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.602
LOC111233515
StAR-related lipid transfer (START) domain containing 15.
      
0.559
gramd1c
GRAM domain containing 1c.
      
 0.431
stxbp4
Syntaxin binding protein 4.
      
 0.426
star
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
      
 0.426
acot9
Acyl-CoA thioesterase 9, tandem duplicate 2.
      
 0.424
LOC111231389
Histone PARylation factor 1.
      
 0.420
gramd1a
GRAM domain containing 1A.
      
 0.418
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.