STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111237693Sialidase domain-containing protein. (370 aa)    
Predicted Functional Partners:
arsa
Arylsulfatase A.
  
  0.925
ugt8
UDP glycosyltransferase 8; Belongs to the UDP-glycosyltransferase family.
   
 
  0.900
gla
Alpha-galactosidase.
     
  0.900
LOC111229470
Uncharacterized protein.
     
  0.900
GAL3ST1
Galactose-3-O-sulfotransferase 1a.
     
  0.900
LOC111234182
Uncharacterized protein.
     
  0.900
galc
Galactosylceramidase b.
     
  0.900
ift81
Intraflagellar transport 81 homolog.
    
 0.467
ift88
Intraflagellar transport 88 homolog.
   
 0.445
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.438
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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