STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d20TBC1 domain family, member 20. (399 aa)    
Predicted Functional Partners:
LOC111216970
Zgc:171927.
    
 0.793
LOC111223566
ZRAB1B, member RAS oncogene family a.
    
 0.793
LOC111220607
Uncharacterized protein.
    
 0.793
RAB1A
RAB1A, member RAS oncogene family.
    
 0.793
rab33b
RAB33B, member RAS oncogene family a.
    
 0.609
LOC111218350
Zgc:101559.
    
 0.609
rab33a
RAB33A, member RAS oncogene family.
    
 0.609
LOC111224709
Uncharacterized protein.
    
 0.601
RAB19
RAB19, member RAS oncogene family.
    
 0.601
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic).
      
 0.579
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.