STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000033100BHLH domain-containing protein. (98 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
   
 0.902
LOC111229281
LIM-domain binding 1b.
    
 0.718
LOC111234467
LIM domain binding 1a.
    
 0.718
LOC111232721
LIM domain binding 2a.
    
 0.691
TCF4
Transcription factor 4.
    
 0.654
LOC111228963
Transcription factor 3a.
    
 0.654
tcf12
Transcription factor 12.
    
 0.654
LOC111232104
Transcription factor 3b.
    
 0.653
LOC111221541
GATA binding protein 1a.
   
 0.653
ENSSDUP00000028334
Uncharacterized protein.
   
 0.653
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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