STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0061DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. (412 aa)    
Predicted Functional Partners:
RC1_0056
Conserved hypothetical protein.
     0.935
RC1_0060
DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
0.898
RC1_0058
Conserved hypothetical protein.
 
     0.863
gin
Gin (G segment invertase), phage site-specific recombinase, resolvase.
 
   
 0.839
RC1_0037
Putative bacteriophage-related protein; Identified by match to protein family HMM PF00239 match to protein family HMM PF07508.
 
   
 0.836
RC1_0059
Conserved hypothetical protein.
 
     0.833
RC1_0066
Phage terminase large subunit (GpA); Identified by match to protein family HMM PF05876.
 
   
 0.807
gidB
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.798
RC1_0063
Uncharacterized protein; Site-specific DNA methylase, pseudogene;Disrupted reading frame; identified by match to protein family HMM PF00145.
 
   0.796
RC1_1289
Phage terminase large subunit (GpA); Identified by match to protein family HMM PF00037 match to protein family HMM TIGR02745.
 
   
 0.794
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.