STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0094Conserved hypothetical protein; Identified by match to protein family HMM PF07505. (273 aa)    
Predicted Functional Partners:
RC1_0095
Type III restriction enzyme, res subunit, putative.
       0.709
RC1_0096
DNA-binding protein, putative; Identified by match to protein family HMM PF04851.
       0.709
RC1_0097
Type III restriction-modification system methyltransferase, putative.
       0.709
RC1_0098
Conserved hypothetical protein; Identified by match to protein family HMM PF01555.
       0.709
RC1_0099
Helicase, SNF2 family, putative.
       0.436
RC1_0100
Conserved hypothetical protein; Identified by match to protein family HMM PF00176 match to protein family HMM PF00271.
       0.436
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.