Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0100Conserved hypothetical protein; Identified by match to protein family HMM PF00176 match to protein family HMM PF00271. (149 aa)    
Predicted Functional Partners:
RC1_0099
Helicase, SNF2 family, putative.
       0.773
RC1_2422
DNA-binding protein, putative; Identified by match to protein family HMM PF00989 match to protein family HMM PF07536 match to protein family HMM TIGR00229.
  
     0.515
RC1_0095
Type III restriction enzyme, res subunit, putative.
       0.469
RC1_0096
DNA-binding protein, putative; Identified by match to protein family HMM PF04851.
       0.469
RC1_0097
Type III restriction-modification system methyltransferase, putative.
       0.469
RC1_0098
Conserved hypothetical protein; Identified by match to protein family HMM PF01555.
       0.469
RC1_0094
Conserved hypothetical protein; Identified by match to protein family HMM PF07505.
       0.436
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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