STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0151Hypothetical protein; Identified by Glimmer2 putative. (467 aa)    
Predicted Functional Partners:
RC1_0941
Transposasespecies of closest; Identified by match to protein family HMM PF01220 match to protein family HMM TIGR01088.
  
     0.601
RC1_3497
EF hand domain protein.
  
     0.567
RC1_1704
Conserved hypothetical protein; Identified by match to protein family HMM PF00005.
  
     0.561
RC1_2449
Identified by match to protein family HMM PF00183 match to protein family HMM PF02518.
  
     0.482
RC1_0765
Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF03739.
  
     0.429
RC1_2437
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.418
RC1_3959
Conserved hypothetical protein; Identified by match to protein family HMM PF01048 match to protein family HMM TIGR01717.
  
     0.411
RC1_2378
ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF04543.
  
     0.404
RC1_3051
Conserved hypothetical protein; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672.
  
     0.404
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.