Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_0271Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF01842. (227 aa)    
Predicted Functional Partners:
RC1_0273
AcrB; Identified by match to protein family HMM PF00512 match to protein family HMM PF02518; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.622
RC1_0272
Efflux transporter, RND family, MFP subunit, putative; Identified by match to protein family HMM PF00107 match to protein family HMM TIGR02818; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.607
pth
peptidyl-tRNA hydrolase pth; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.435
RC1_0270
C4-dicarboxylate transport sensor protein DctB, putative; Identified by match to protein family HMM PF00370 match to protein family HMM PF02782 match to protein family HMM TIGR01311.
       0.404
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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