STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0279Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00561. (205 aa)    
Predicted Functional Partners:
RC1_3536
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF02562.
  
     0.523
RC1_1178
Transcriptional regulator, putative; Identified by match to protein family HMM TIGR02283.
  
   
 0.482
RC1_0309
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715.
  
     0.475
RC1_0280
HlyD family secretion protein; Contains TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.454
RC1_0281
AcrB; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.447
pth
peptidyl-tRNA hydrolase pth; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.424
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.