STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0284Conserved hypothetical protein; Identified by match to protein family HMM PF00873. (139 aa)    
Predicted Functional Partners:
RC1_0286
Polyhydroxyalkanoic acid depolymerase; [synonyms] PHA depolymerase PHB depolymerase identified by match to protein family HMM PF02310 match to protein family HMM PF04055 match to protein family HMM TIGR02026.
 
     0.936
RC1_0081
Plasmid stabilization system protein, RelE; Identified by match to protein family HMM PF05016.
  
 
 0.876
RC1_3259
Conserved hypothetical protein; Similar to plasmid stabilization system protein, RelE.
  
 
 0.876
RC1_2758
Plasmid stabilization system protein, RelE/ParE family.
  
 
 0.863
RC1_2489
Conserved hypothetical protein; Identified by match to protein family HMM PF01027.
   
 
 0.745
cobB
NAD-dependent deacetylase; [Synonyms] Regulatory protein SIR2 homolog identified by match to protein family HMM PF02325; Belongs to the sirtuin family. Class III subfamily.
   
    0.670
RC1_0498
Conserved hypothetical protein; Identified by match to protein family HMM PF00005 match to protein family HMM TIGR01978.
  
     0.551
RC1_0667
Hypothetical protein; Identified by Glimmer2 putative.
   
    0.547
bchE
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; Identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730.
       0.510
bchJ
Bacteriochlorophyll synthase 23 kDa chain; [synonyms] bacteriochlorophyll 4-vinyl reductase identified by match to protein family HMM PF00440.
       0.500
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.