STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0331Iron uptake protein, putative. (108 aa)    
Predicted Functional Partners:
RC1_0330
Conserved hypothetical protein; Identified by match to protein family HMM PF00015 match to protein family HMM PF00989 match to protein family HMM TIGR00229.
 
    0.956
RC1_0332
Conserved hypothetical protein.
 
     0.852
fepA
Ferric enterobactin receptor, putative; Gene symbol synonyms identified by match to protein family HMM PF03929.
 
    0.834
RC1_0328
Conserved hypothetical protein; Identified by match to protein family HMM PF00155 match to protein family HMM PF00266 match to protein family HMM TIGR01409.
       0.773
RC1_2824
Conserved hypothetical protein; Identified by match to protein family HMM PF01488 match to protein family HMM TIGR00507.
   
    0.710
RC1_4125
Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF02867 match to protein family HMM TIGR01443 match to protein family HMM TIGR01445 match to protein family HMM TIGR02504.
 
    0.668
RC1_3844
Sigma factor regulatory protein, FecR; Identified by match to protein family HMM PF00196 match to protein family HMM PF04542 match to protein family HMM PF04545 match to protein family HMM TIGR02937.
 
    0.617
RC1_3811
Sigma factor regulatory protein, FecR; Identified by match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR02622.
 
    0.600
RC1_4124
Sigma factor regulatory protein, FecR; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672 match to protein family HMM PF05227.
 
    0.563
RC1_4041
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00534.
 
    0.560
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.