STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0350Response regulator receiver domain protein REC; Identified by match to protein family HMM PF02518. (125 aa)    
Predicted Functional Partners:
cheAY
Chemotaxis protein CheA (C terminus homologous to cheY); Also called histidine kinase; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
  
 0.989
cheA2
Chemotaxis protein CheA; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715 match to protein family HMM TIGR01783.
  
 0.986
RC1_0351
Multi-sensor hybrid histidine kinase, putative; Identified by match to protein family HMM PF01740.
 
 
 
 0.940
cheA3
Histidine Sensor Kinase CheA3; Frameshift reading error, two bases mis-inserted (annotation error).
 
 
 0.911
cheZ-2
Chemotaxis phosphatase protein CheZ, putative.
     
 0.900
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.879
fliM-2
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.879
cckA-2
Cell cycle histidine kinase CckA; Contains PF02518 identified by match to protein family HMM PF00534.
 
 
 
 0.768
aer
Aerotaxis sensor receptor Aer; Sensory box protein.Gene symbol synonym air.
   
 0.730
cheW2
Chemotaxis signal transduction protein CheW; Identified by match to protein family HMM PF01739 match to protein family HMM PF03705.
  
 
 0.729
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.