STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgAC-factor protein; [Synonyms] C signal. (228 aa)    
Predicted Functional Partners:
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
    0.691
RC1_0394
2-hydroxychromene-2-carboxylate isomerase, putative; Identified by match to protein family HMM PF01039.
     
 0.623
RC1_0396
Chitinase class II protein, putative; Identified by match to protein family HMM PF00326 match to protein family HMM PF02129; Belongs to the glycosyl hydrolase 18 family.
 
     0.541
alkB
[Synonyms] Alkane omega-hydroxylase.
     
 0.509
RC1_0397
acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00487; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.466
RC1_3088
GDSL-like Lipase; ABC transporter, ATP-binding protein, putative.
 
  
 0.451
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.