STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pccApropionyl-CoA carboxylase alpha chain. (666 aa)    
Predicted Functional Partners:
pccB
propionyl-CoA carboxylase, beta chain.
 0.996
accB
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.970
RC1_0226
Biotin dependent acyl-CoA carboxylase, putative; Identified by match to protein family HMM PF03963.
 
 0.955
mccB
[synonyms] 3-Methylcrotonyl-CoA carboxylase non-biotin-containing subunit.
 
 0.946
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 0.943
RC1_3533
acetyl-CoA carboxylase carboxyltransferase; Identified by match to protein family HMM PF01656 match to protein family HMM TIGR01968.
 
 0.940
accA
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
 
 
 0.930
fadA-2
3-ketoacyl-CoA thiolase; [synonyms] (Fatty oxidation complex beta subunit); Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.927
RC1_1223
[Synonyms] DL-methylmalonyl-CoA racemase Gene name identified by match to protein family HMM PF01336 match to protein family HMM PF02811 match to protein family HMM PF07733 match to protein family HMM TIGR00594.
    
 0.924
prpC
2-methylcitrate synthase; [synonyms] Citrate synt Hase II; Belongs to the citrate synthase family.
  
 
 0.924
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.