Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0488Conserved hypothetical protein. (130 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC.
 
  
 0.959
sufD
FeS assembly protein SufD.
 
   
 0.950
sufS
Cysteine desulfurase; Identified by match to protein family HMM PF01661; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.945
RC1_0489
SUF system FeS assembly protein, NifU family.
 
  
 0.940
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01521 match to protein family HMM TIGR00049.
 
   
 0.911
RC1_0487
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF00037 match to protein family HMM TIGR02936; Belongs to the HesB/IscA family.
  
  
 0.770
nifU
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.749
nifQ
Nitrogen fixation protein NifQ; Identified by match to protein family HMM PF00512 match to protein family HMM PF00672 match to protein family HMM PF02518.
  
  
 0.701
RC1_0494
Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF01883.
 
   
 0.653
RC1_0486
Hypothetical protein; Identified by Glimmer2 putative.
       0.553
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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