STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0499Hypothetical protein; Identified by Glimmer2 putative. (210 aa)    
Predicted Functional Partners:
chvl
Transcriptional regulatory protein ChvI; DNA-binding response regulator.Matched to PF00072: Response regulator receiver domain and PF00486: Transcriptional regulatory protein, C terminal; identified by match to protein family HMM PF02082 match to protein family HMM TIGR00738 match to protein family HMM TIGR02944.
     
 0.928
RC1_0501
Sensor histidine kinase, putative; Identified by match to protein family HMM PF01609.
       0.804
RC1_0660
Transcriptional regulator, MarR family protein.
      
 0.654
lrp-4
Leucine-responsive regulatory protein; Gene symbol synonyms identified by match to protein family HMM PF00717.
      
 0.654
RC1_0145
Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF00376.
      
 0.652
RC1_0443
Transcriptional regulator, AsnC family protein; Identified by match to protein family HMM PF00126 match to protein family HMM PF03466.
      
 0.652
RC1_0825
DNA-binding protein, putative; Identified by match to protein family HMM TIGR01656 match to protein family HMM TIGR01662.
      
 0.652
RC1_3536
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF02562.
      
 0.652
RC1_3708
Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00313 match to protein family HMM PF08206.
      
 0.652
RC1_3072
Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF00291 match to protein family HMM TIGR01136 match to protein family HMM TIGR01139.
      
 0.489
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.