STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbECDP-paratose 2-epimerase; Identified by match to protein family HMM PF03976. (351 aa)    
Predicted Functional Partners:
RC1_0773
Conserved hypothetical protein; Identified by match to protein family HMM PF01047.
     0.966
RC1_0529
Glycosyl transferase, group 1 family protein.
 
  
 0.956
RC1_3987
dTDP-4-dehydrorhamnose 3,5-epimerase, putative; [Synonyms] dTDP-4-keto-6-deoxyglucose 3,5-epimerase dTDP-L-rhamnose synthetase identified by match to protein family HMM PF07396.
 
  
 0.950
RC1_0771
Glucose-1-phosphate thymidylyltransferase, putative; Identified by match to protein family HMM PF00753.
 
  
 0.939
RC1_0530
Conserved hypothetical protein; Identified by match to protein family HMM PF01053 match to protein family HMM PF01212.
 
    0.933
RC1_0531
Conserved hypothetical protein; Identified by match to protein family HMM PF06299.
 
    0.933
RC1_0532
Conserved hypothetical protein; Identified by match to protein family HMM PF01979 match to protein family HMM PF07969 match to protein family HMM TIGR02318.
 
    0.932
RC1_0528
Oxidoreductase With radical SAM domain, putative.
 
     0.886
rkpK
UDP-glucose 6-dehydrogenase; Gene symbol synonym tuaD; identified by match to protein family HMM PF00583.
 
  
 0.884
RC1_4000
Polysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF00583.
  
  
 0.874
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.