STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadE36Aminoglycoside phosphotransferase, putative; Identified by match to protein family HMM PF05534. (351 aa)    
Predicted Functional Partners:
RC1_1018
acyl-CoA dehydrogenase, putative.
 
 0.984
RC1_0550
Oxidoreductase, short chain dehydrogenase.
 
 
 0.865
RC1_0548
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00561.
 
    0.766
RC1_0547
Peroxisomal bifunctional enzyme; [synonyms] PBE PBFE [Includes] Enoyl-CoA hydratase 3,2-trans-enoyl-CoA isomerase 3-hydroxyacyl-CoA dehydrogenase identified by match to protein family HMM PF00015 match to protein family HMM PF00672; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.700
RC1_2742
Oxidoreductase, zinc-binding dehydrogenase family.
 
   0.654
RC1_3433
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00459 match to protein family HMM TIGR02067.
 
    0.654
RC1_3098
acyl-CoA dehydrogenase, putative.
 
 
 0.630
RC1_0378
acyl-CoA dehydrogenase.
 
 0.622
alkK
medium-chain-fatty-acid--CoA ligase; [synonyms] Medium-chain acyl-CoA synthetase identified by match to protein family HMM PF05016.
 
   0.610
RC1_0549
Oxidoreductase, short chain dehydrogenase; Identified by match to protein family HMM PF05233 match to protein family HMM PF07879 match to protein family HMM TIGR01848.
  
 
 0.599
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (54%) [HD]