STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0556Membrane-bound metallopeptidase, putative; PF01551 identified by match to protein family HMM PF00106. (417 aa)    
Predicted Functional Partners:
RC1_4098
Cell division protein, putative; Identified by match to protein family HMM PF01116 match to protein family HMM TIGR00167 match to protein family HMM TIGR01521.
 
 
 
 0.944
ctpA
Carboxy-terminal processing protease CtpA; Conserved hypothetical protein, pseudogene;identified by match to protein family HMM PF00107; Belongs to the peptidase S41A family.
 
  
 0.940
RC1_3480
Conserved hypothetical protein; Identified by match to protein family HMM PF04317.
  
   0.878
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.814
RC1_3180
TPR domain protein, putative; Identified by match to protein family HMM PF01636.
 
 
   0.713
RC1_3183
uracil-DNA glycosylase, family 4 protein, putative; Family is homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis.
   
   0.711
RC1_0856
Conserved hypothetical protein; Identified by match to protein family HMM PF00196.
  
 
 0.706
RC1_0804
TPR domain protein; Identified by match to protein family HMM PF00614.
   
   0.634
RC1_0932
Peptidase M48, Ste24p, putative; PF01435.
   
   0.634
amiB-2
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF00583.
 
   
 0.634
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.