STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0667Hypothetical protein; Identified by Glimmer2 putative. (192 aa)    
Predicted Functional Partners:
cobB
NAD-dependent deacetylase; [Synonyms] Regulatory protein SIR2 homolog identified by match to protein family HMM PF02325; Belongs to the sirtuin family. Class III subfamily.
   
    0.818
RC1_3645
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.696
hutC
Histidine utilization repressor.
   
    0.594
RC1_0082
Transcriptional regulators (CopG/Arc/MetJ DNA-binding domain), putative; Identified by match to protein family HMM PF03693 match to protein family HMM TIGR02606.
   
    0.547
RC1_0284
Conserved hypothetical protein; Identified by match to protein family HMM PF00873.
   
    0.547
RC1_0666
Hypothetical protein; Identified by Glimmer2 putative.
       0.518
nadE
Glutamine-dependent NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.415
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.