STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0765Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF03739. (169 aa)    
Predicted Functional Partners:
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.735
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.717
RC1_2549
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.681
RC1_3660
Conserved hypothetical protein; Identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866.
  
     0.663
RC1_3306
Conserved hypothetical protein; Identified by match to protein family HMM PF02798.
  
     0.654
RC1_3880
Hypothetical protein; Identified by Glimmer2 putative.
  
    0.647
RC1_1928
CRISPR-associated protein, GSU0054 family.
  
     0.639
RC1_0222
DNA-binding protein (HTH domain), putative; Identified by match to protein family HMM PF03240.
  
 
 
 0.620
RC1_0942
Hemolysin activation; Identified by match to protein family HMM PF01323.
  
     0.603
RC1_0766
Conserved hypothetical protein; Identified by match to protein family HMM PF04116.
       0.563
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.