Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
flhFFlagellar GTP-binding protein FlhF; Identified by match to protein family HMM PF00115 match to protein family HMM TIGR02891. (330 aa)    
Predicted Functional Partners:
fleN
Flagellar synthesis regulator, FleN; Identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866; Sigma-54 interaction domain.
 
 
 0.998
fliO
Flagellar assembly protein FliO, putative.
  
  
 0.975
flhA-2
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.958
RC1_3818
Conserved hypothetical protein; Identified by match to protein family HMM PF02624 match to protein family HMM TIGR00702.
  
 
 0.955
fliN-2
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 
 0.937
fliH-2
Flagellar assembly protein FliH, putative; Export component negative regulator of FliI cytoplasmic; identified by match to protein family HMM PF00994 match to protein family HMM PF03453 match to protein family HMM PF03454 match to protein family HMM TIGR00177.
 
  
 0.927
RC1_0787
Probable DNA polymerase III; Identified by match to protein family HMM PF00291.
 
     0.922
flgF-2
Flagellar basal-body rod protein FlgF; Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00204 match to protein family HMM PF00986 match to protein family HMM PF01751 match to protein family HMM PF02518 match to protein family HMM TIGR01055; Belongs to the flagella basal body rod proteins family.
 
  
 0.918
fliF-2
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.912
flgF
Flagellar basal-body rod protein FlgF; Gene symbol synonym flaC.Rod protein transmission shaft periplasmic space; identified by match to protein family HMM PF00691; Belongs to the flagella basal body rod proteins family.
  
  
 0.905
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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