Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
flbDTranscriptional regulatory protein FlbD (LafK); Contains PF00158. (485 aa)    
Predicted Functional Partners:
fleN
Flagellar synthesis regulator, FleN; Identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866; Sigma-54 interaction domain.
  
 
 0.960
fliH-2
Flagellar assembly protein FliH, putative; Export component negative regulator of FliI cytoplasmic; identified by match to protein family HMM PF00994 match to protein family HMM PF03453 match to protein family HMM PF03454 match to protein family HMM TIGR00177.
 
  
 0.855
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.844
RC1_0885
Tetratricopeptide TPR_2 (cell wall/envelope/membrane biosynthesis); Identified by match to protein family HMM PF04168 match to protein family HMM PF04169 match to protein family HMM PF04174.
  
 
 
 0.837
cheL-2
Chemotactic signal-response protein CheL, putative; Identified by match to protein family HMM PF03968 match to protein family HMM PF04453.
  
  
 0.818
flhA-2
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.799
fliM-2
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.788
flaA
Flagellin protein FlaA; Identified by match to protein family HMM PF01514 match to protein family HMM TIGR00206.
 
  
 0.781
fliN-2
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.778
flhF
Flagellar GTP-binding protein FlhF; Identified by match to protein family HMM PF00115 match to protein family HMM TIGR02891.
  
  
 0.774
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.