STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0804TPR domain protein; Identified by match to protein family HMM PF00614. (449 aa)    
Predicted Functional Partners:
tonB-3
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
    0.942
RC1_0799
TonB system biopolymer transport component, putative; Identified by match to protein family HMM PF00072 match to protein family HMM PF00158 match to protein family HMM PF02954 match to protein family HMM PF07728.
 
   
 0.927
RC1_0800
MotA; Identified by match to protein family HMM PF01618.
 
    0.921
RC1_0801
MotA; Identified by match to protein family HMM PF01052 match to protein family HMM TIGR02480.
 
    0.914
exbD2
Biopolymer transport ExbD2 protein.
 
     0.898
RC1_0824
Glycosyl transferase family protein.
 
 
 
 0.763
RC1_2752
Conserved hypothetical protein.
  
     0.721
RC1_0556
Membrane-bound metallopeptidase, putative; PF01551 identified by match to protein family HMM PF00106.
   
   0.634
RC1_0306
TonB dependent receptor, putative; Identified by match to protein family HMM PF00005 match to protein family HMM PF01061.
  
     0.505
RC1_3524
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00326 match to protein family HMM PF02897.
  
     0.501
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.