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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0806TonB dependent receptor, putative. (718 aa)    
Predicted Functional Partners:
tonB-2
Protein TonB; Links inner and outer membranes; identified by match to protein family HMM PF01706 match to protein family HMM TIGR00207.
 
 
 0.796
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.752
RC1_2946
TonB-dependent receptor, putative; Identified by match to protein family HMM PF06769 match to protein family HMM TIGR02116.
  
    0.747
RC1_3880
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.738
RC1_2549
Hypothetical protein; Identified by Glimmer2 putative.
 
   
 0.733
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.730
RC1_0942
Hemolysin activation; Identified by match to protein family HMM PF01323.
  
     0.728
tonB-6
TonB-dependent siderophore receptor, putative; Identified by match to protein family HMM PF02562.
  
  
 0.726
fhuA
Ferrichrome-iron receptor; Gene symbol synonym identified by match to protein family HMM PF00535.
  
     0.693
exbD-2
Biopolymer transport ExbD protein; Identified by match to protein family HMM PF00015.
 
  
 0.692
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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