STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0807Conserved hypothetical protein. (111 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
 
     0.678
RC1_3411
Conserved hypothetical protein; Identified by match to protein family HMM PF00162.
  
     0.653
RC1_4100
Conserved hypothetical protein; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509.
  
     0.610
RC1_2256
Conserved hypothetical protein; Identified by match to protein family HMM PF00561 match to protein family HMM TIGR01249.
  
     0.597
RC1_0806
TonB dependent receptor, putative.
       0.566
RC1_1760
Conserved hypothetical protein; Identified by match to protein family HMM PF00378 match to protein family HMM PF00725 match to protein family HMM PF02737.
  
     0.562
RC1_1623
Conserved hypothetical protein; Identified by match to protein family HMM PF05960.
  
     0.555
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.553
RC1_3416
Conserved hypothetical protein; Identified by match to protein family HMM PF00797.
  
     0.533
RC1_2634
MOSC domain protein, putative; Identified by match to protein family HMM PF01553.
  
     0.531
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.