STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0811Conserved hypothetical protein; Identified by match to protein family HMM PF03544 match to protein family HMM TIGR01352. (110 aa)    
Predicted Functional Partners:
RC1_0810
Hypothetical protein; Identified by Glimmer2 putative.
 
     0.939
RC1_2555
Conserved hypothetical protein.
  
     0.627
RC1_3457
Conserved hypothetical protein.
  
     0.557
RC1_0409
Conserved hypothetical protein; Identified by match to protein family HMM PF00571 match to protein family HMM PF01769 match to protein family HMM PF03448 match to protein family HMM TIGR00400.
  
     0.556
RC1_0536
Conserved hypothetical protein; Identified by match to protein family HMM PF00534.
  
     0.525
msrA
Peptide methionine-S-sulfoxide reductase MsrA, putative; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.504
RC1_2160
Conserved hypothetical protein.
  
     0.486
RC1_3822
Contains VCBS repeat and putative Ig domain.
  
     0.458
RC1_0812
Hypothetical protein; Identified by Glimmer2 putative.
       0.427
RC1_0925
SAM-dependent methyltransferase, putative.
  
     0.425
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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