STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0815Conserved hypothetical protein. (162 aa)    
Predicted Functional Partners:
czcA
Heavy metal efflux pump, CzcA family protein; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.652
RC1_0813
Conserved hypothetical protein; Identified by match to protein family HMM PF00310.
       0.593
rfbB
dTDP-glucose 4,6-dehydratase; Gene symbol synonyms rffG, rmlB.Part of an rfb gene cluster; identified by match to protein family HMM PF01975 match to protein family HMM TIGR00087; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.437
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.437
RC1_0812
Hypothetical protein; Identified by Glimmer2 putative.
       0.407
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.