Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_0874Transglutaminase-like domain protein; Identified by match to protein family HMM PF01979 match to protein family HMM PF07969. (309 aa)    
Predicted Functional Partners:
RC1_0876
Conserved hypothetical protein.
 
  
 0.982
RC1_1363
Conserved hypothetical protein; Identified by match to protein family HMM PF03446 match to protein family HMM TIGR01692.
  
 0.914
RC1_1362
Conserved hypothetical protein; Identified by match to protein family HMM PF01047.
 
    0.872
RC1_0877
Transglutaminase-like domain protein; Identified by match to protein family HMM PF00270 match to protein family HMM PF00271.
 
    
0.867
flaA-2
Flagellin protein FlaA, putative; Identified by match to protein family HMM PF00015.
     
 0.779
cheZ-2
Chemotaxis phosphatase protein CheZ, putative.
     
 0.762
RC1_0885
Tetratricopeptide TPR_2 (cell wall/envelope/membrane biosynthesis); Identified by match to protein family HMM PF04168 match to protein family HMM PF04169 match to protein family HMM PF04174.
     
 0.760
flaA
Flagellin protein FlaA; Identified by match to protein family HMM PF01514 match to protein family HMM TIGR00206.
      
 0.700
cheL
Chemotactic signal-response protein CheL, putative; Identified by match to protein family HMM PF07378.
      
 0.700
motB
Chemotaxis MotB protein; Stator protein converts proton energy into torque integral to plasma membrane; identified by match to protein family HMM PF00072 match to protein family HMM PF00486.
      
 0.700
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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