Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0901ATPase, AAA family; Identified by match to protein family HMM PF02049. (284 aa)    
Predicted Functional Partners:
RC1_0905
Conserved hypothetical protein; Identified by match to protein family HMM PF00072 match to protein family HMM PF00512 match to protein family HMM PF02518 match to protein family HMM TIGR00229.
 
    0.887
cbbO
Rubisco activation protein CbbO, putative; [contains] von Willebrand factor type A domain identified by match to protein family HMM PF00016 match to protein family HMM PF02788.
  
 
 0.819
alaS
alanyl-tRNA synthetase AlaS; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.571
RC1_0902
Conserved hypothetical protein; Identified by match to protein family HMM PF01313 match to protein family HMM TIGR01402.
       0.505
dme
NAD-dependent malic enzyme; Identified by match to protein family HMM PF00441 match to protein family HMM PF02770 match to protein family HMM PF02771 match to protein family HMM PF08028.
  
    0.439
tme
NADP-dependent malic enzyme; Synonym gene name 'maeB' from E.coli identified by match to protein family HMM PF00392 match to protein family HMM PF07702 match to protein family HMM TIGR02018.
  
    0.439
RC1_0903
Conserved hypothetical protein; Identified by match to protein family HMM PF01311 match to protein family HMM TIGR01400.
       0.431
RC1_3414
DUF58 domain-containing protein; Double-transmembrane region pseudogene;identified by match to protein family HMM PF01863.
  
  
 0.409
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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