Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0902Conserved hypothetical protein; Identified by match to protein family HMM PF01313 match to protein family HMM TIGR01402. (429 aa)    
Predicted Functional Partners:
RC1_0903
Conserved hypothetical protein; Identified by match to protein family HMM PF01311 match to protein family HMM TIGR01400.
  
 0.984
RC1_0805
Glutamine amidotransferase, class-II, putative; PF00310 identified by match to protein family HMM PF05532.
  
  
 0.914
gshA
Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
  
 0.777
RC1_0325
Isopenicillin N epimerase, putative; Identified by match to protein family HMM PF03186 match to protein family HMM TIGR00380.
  
  
 0.679
sufS
Cysteine desulfurase; Identified by match to protein family HMM PF01661; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.679
RC1_1176
Transglycosylase associated protein, putative; Identified by match to protein family HMM PF00920 match to protein family HMM TIGR00110.
   
    0.603
ymgE
Transglycosylase-associated protein, putative; Gene symbol synonym tag; identified by match to protein family HMM PF00005.
   
    0.603
RC1_1721
Conserved hypothetical protein; Identified by match to protein family HMM PF00072 match to protein family HMM PF00196 match to protein family HMM PF04545.
  
  
 0.528
RC1_0537
Conserved hypothetical protein.
  
  
 0.518
RC1_0901
ATPase, AAA family; Identified by match to protein family HMM PF02049.
       0.505
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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