STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0908Sensory box sensor histidine kinase, putative; Identified by match to protein family HMM PF00154 match to protein family HMM TIGR02012. (579 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA; Identified by match to protein family HMM PF01887.
 
 0.964
RC1_0633
Sensor histidine kinase; Contains PF02518, PF00072, and TIGR00229; identified by match to protein family HMM PF00226.
 
 0.945
RC1_1464
Sensor histidine kinase; Contains PF02518.
 
 0.848
divJ-5
Histidine protein kinase DivJ (or putative bacteriophytochrome); Identified by match to protein family HMM PF01354 match to protein family HMM PF03102.
 
 0.837
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
 
 
 0.829
rpFC
Identified by match to protein family HMM PF00231 match to protein family HMM TIGR01146.
 
 0.829
RC1_3878
Chemotaxis protein methyltransferase, putative; Name variations include MCP methyltransferase.
  
 0.778
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
 
 0.769
RC1_0351
Multi-sensor hybrid histidine kinase, putative; Identified by match to protein family HMM PF01740.
 
 0.766
cckA-2
Cell cycle histidine kinase CckA; Contains PF02518 identified by match to protein family HMM PF00534.
 
 
 0.765
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.