Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RC1_0937Epoxide hydrolase; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672. (321 aa)    
Predicted Functional Partners:
RC1_3610
Retinal pigment epithelial membrane protein, putative; Identified by match to protein family HMM PF01575.
  
     0.606
RC1_2842
MaoC-like dehydratase, putative; Identified by match to protein family HMM PF00587 match to protein family HMM PF02824 match to protein family HMM PF03129 match to protein family HMM PF07973 match to protein family HMM TIGR00418.
  
  
  0.553
RC1_3279
Methyltransferase, putative; Identified by match to protein family HMM PF01609.
 
     0.543
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.522
RC1_2397
FAD-binding monooxygenase, putative; Identified by match to protein family HMM PF00583.
 
 
 0.515
RC1_3345
Conserved hypothetical protein; [contains] hydrolase, alpha.
  
     0.467
RC1_1018
acyl-CoA dehydrogenase, putative.
  
 
  0.455
RC1_3098
acyl-CoA dehydrogenase, putative.
  
 
  0.428
RC1_1310
Conserved hypothetical protein.
    
  0.422
RC1_2224
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
    
  0.422
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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